Session 50. Efficient computation strategies in genomic prediction (joint session with Interbull)

Date: 3rd September 2015; 14:00 – 18:00 hours
Chairperson: Z. Liu

Theatre Session 50

Use of genomic recursions in single-step genomic BLUP with a large number of genotypes
Invited I. Misztal, B. Fragomeni, D.A.L. Lourenco, Y. Masuda, I. Aguilar, A. Legarra and T.J. Lawlor

Genomic predictions with approximated G-inverse from large-scale genotyping data
Y. Masuda, I. Misztal, S. Tsuruta, D.A.L. Lourenco, B. Fragomeni, A. Legarra, I. Aguilar and T.J. Lawlor

Large-scale single-step genomic BLUP evaluation for American Angus
D.A.L. Lourenco, S. Tsuruta, B.O. Fragomeni, Y. Masuda, I. Aguilar, A. Legarra, J.K. Bertrand, D.W. Moser and I. Misztal

Single-step approaches: from conceptual simplicity to implementation complexity
Invited V. Ducrocq

Exclusion or inclusion of information of culled bulls on the single-step genomic evaluation
M. Koivula, I. Stranden, G.P. Aamand and E.A. Mantysaari

 

Effect of SNP chip density on model reliability of genomic evaluations
I. Stranden and E.A. Mantysaari

Generalizing the Gaussian infinitesimal model when using information from genomic markers
R.J.C. Cantet

 Prediction with major genes partially genotyped using gene content multiple trait BLUP
A. Legarra and Z.G. Vitezica

Split-and-merge Bayesian variable selection enables efficient genomic prediction using sequence data
M.P.L. Calus, C. Schrooten and R.F. Veerkamp

Comparing genomic prediction and GWAS with sequence information vs HD or 50k SNP chips
R.F. Veerkamp, R. Van Binsbergen, M.P.L. Calus, C. Schrooten and A.C. Bouwman

A comparison of short and long range phasing methods
C.F. Baes, B. Gredler, B. Bapst, F.R. Seefried, H. Signer-Hasler, C. Flury, C. Stricker and D. Garrick

GATK and Beagle 4.0 as the two different software for haplotype phasing for NGS data
M. Frąszczak, M. Mielczarek, J. Szyda, G. Minozzi, E.L. Nicolazzi, C. Diaz, A. Rossoni, C. Egger-Danner, J. Woolliams, L. Varona, J. Williams, H. Schwarzenbacher, C. Ferrandi, T. Solberg, F. Seefried, D. Vicario and R. Giannico